Publications
2023
Oxygen-regulated post-translation modifications as master signalling pathway in cells
M Batie, T Fasanya, N S Kenneth, S Rocha
EMBO Rep. 2023 Dec 6;24(12):e57849. doi: 10.15252/embr.202357849.
PMID: 37877678
Enhancing radiotherapy outcomes in rectal cancer: A systematic review of targeting hypoxia-induced radioresistance
M Fok, R Hill, H Fowler, R Clifford, A Kler, J Uzzi-Daniel, S Rocha, G Grundy, J Parsons, D Vimalachandran
Clin Transl Radiat Oncol. 2023 Oct 28;44:100695. doi: 10.1016/j.ctro.2023.100695.
PMID: 37961749
Comprehensive analysis of the lysine succinylome in fish oil-treated prostate cancer cells
Y Jiang , C He , H Ye , Q Xu , X Chen , Y Chen , J Sun , S Rocha , M Wang
Life Sci Alliance. 2023 Sep 8;6(11):e202302131. doi: 10.26508/lsa.202302131.
PMID: 37684043
Targeting SOD1 via RNAi with PEGylated graphene oxide nanoparticles in platinum-resistant ovarian cancer
A Szénási, E Sivasudhan, H Du, P Zhang, J Huang, Z Zhang, S Rocha, M Wang
Cancer Gene Ther. 2023 Nov;30(11):1554-1568. doi: 10.1038/s41417-023-00659-2.
PMID: 37582934
The role of autophagy in hypoxia-induced radioresistance
R H Hill, M Fok, G Grundi, J L Parsons, S Rocha
Radiother Oncol. 2023 Dec;189:109951. doi: 10.1016/j.radonc.2023.109951.
PMID: 37838322
Fixed Cell Immunofluorescence for Quantification of Hypoxia-Induced Changes in Histone Methylation.
D Shakir, M Batie, S Rocha
Book chapter
Methods Mol Biol. 2023;2675:261-269. doi: 10.1007/978-1-0716-3247-5_19.
PMID: 37258769
O Myronenko, V Foris, S Crnkovic, A Olschewski, S Rocha, MR Nicolls, H Olschewski
European Respiratory Review 32 (167) 2023 doi: 10.1183/16000617.0173-2022
PMID:36631133
Functional crosstalk between chromatin and hypoxia signalling
H Collier, A Albanese, CS Kwok, J Kou, S Rocha
Cellular Signalling, 110660 2023 doi.org/10.1016/j.cellsig.2023.110660
PMID:36990334
2022
RM Hill, S Rocha, JL Parsons
Cancers 14 (17), 4130 2022 doi.org/10.3390/cancers14174130
PMID:36077667
Regulation of chromatin accessibility by hypoxia and HIF
M Batie, J Frost, D Shakir, S Rocha
Biochemical Journal 479 (6), 767-786 2022 doi.org/10.1042/BCJ20220008
PMID:35258521
M Batie, NS Kenneth, S Rocha
Biochemical Journal 479 (3), 245-257 2022 doi.org/10.1042/BCJ20210554
PMID:35119457
AT Pinto, AB Machado, H Osório, ML Pinto, R Vitorino, G Justino, C Santa, ...
Cancers 15 (1), 270 2022 doi.org/10.3390/cancers15010270
PMID:36612268
2021
LA Daly, PJ Brownridge, M Batie, S Rocha, V Sée, CE Eyers
Science signaling 14 (692), eabf6685 2021 doi: 10.1126/scisignal.abf6685
PMID:34285132
PBRM1 cooperates with YTHDF2 to control HIF-1α protein translation
A Shmakova, M Frost, M Batie, NS Kenneth, S Rocha
Cells 10 (6), 1425 2021 2021 doi.org/10.3390/cells100614
PMID:34200988
Role of Hypoxia in the Control of the Cell Cycle
J Druker, JW Wilson, F Child, D Shakir, T Fasanya, S Rocha
International Journal of Molecular Sciences 22 (9), 4874 2021 doi.org/10.3390/ijms2209487
PMID:34062959
J Frost, S Rocha, A Ciulli
Journal of Biological Chemistry 297 (2) 2021 doi.org/10.1016/j.jbc.2021.100910
PMID:34174286
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1
DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ...
Autophagy 17 (1), 1-382 2021 doi.org/10.1080/15548627.2020.1797280
PMID:33634751
Use of ChIP-qPCR to Study the Crosstalk Between HIF and NF-κB Signaling in Hypoxia and Normoxia
D Shakir, M Batie, S Rocha
NF-κB Transcription Factors: Methods and Protocols, 255-265. 2021 Book chapter
Roles of HIF and 2-Oxoglutarate-Dependent Dioxygenases in Controlling Gene Expression in Hypoxia.
J Frost, M Frost, M Batie, H Jiang, S Rocha
Cancers 2021, 13, 350. 2021 doi.org/10.3390/cancers13020350
PMID:33477877
Transcription| Regulation of gene transcription by hypoxia-inducible factor 1α
F Child, J Frost, D Shakir, JW Wilson, S Rocha
Elsevier 2021 book chapter
2020
Hypoxia induces rapid changes to histone methylation and reprograms chromatin.
Batie M, Frost J, Frost M, Wilson JW, Schofield P, Rocha S.
RNA-seq analysis of PHD and VHL inhibitors reveals differences and similarities to the hypoxia response.
Frost J, Ciulli A, Rocha S.
2018
SINHCAF/FAM60A and SIN3A specifically repress HIF-2α expression.
Biddlestone J, Batie M, Bandarra D, Munoz I, Rocha S.
Batie M, Del Peso L, Rocha S.
2017
Maniaci C, Hughes SJ, Testa A, Chen W, Lamont DJ, Rocha S, Alessi DR, Romeo R, Ciulli A.
Nat Commun. 2017 Oct 10;8(1):830. doi: 10.1038/s41467-017-00954-1.
Soares P, Gadd MS, Frost J, Galdeano C, Ellis L, Epemolu O, Rocha S, Read KD, Ciulli A.
J Med Chem. 2018 Jan 25;61(2):599-618. doi: 10.1021/acs.jmedchem.7b00675. Epub 2017 Sep 18.
PMID:28853884
Hypoxia and Inflammation in Cancer, Focus on HIF and NF-κB.
D'Ignazio L, Batie M, Rocha S.
Biomedicines. 2017 May 9;5(2). pii: E21. doi: 10.3390/biomedicines5020021. Review.
PMID:28536364
KDM2 Family Members are Regulated by HIF-1 in Hypoxia.
Batie M, Druker J, D'Ignazio L, Rocha S.
Cells. 2017 Mar 17;6(1). pii: E8. doi: 10.3390/cells6010008.
PMID:28304334
2016
Frost J, Galdeano C, Soares P, Gadd MS, Grzes KM, Ellis L, Epemolu O, Shimamura S, Bantscheff M, Grandi P, Read KD, Cantrell DA, Rocha S, Ciulli A.
Nat Commun. 2016 Nov 4;7:13312. doi: 10.1038/ncomms13312.
PLoS One. 2016 Aug 11;11(8):e0160891. doi: 10.1371/journal.pone.0160891. eCollection 2016.
PMID:27513864
Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines.
Ono M, Yamada K, Bensaddek D, Afzal V, Biddlestone J, Ortmann B, Mudie S, Boivin V, Scott MS, Rocha S, Lamond AI.
PLoS One. 2016 Apr 29;11(4):e0154759. doi: 10.1371/journal.pone.0154759. eCollection 2016.
PMID:27128805
The Chromatin Remodelling Enzymes SNF2H and SNF2L Position Nucleosomes adjacent to CTCF and Other Transcription Factors.
Wiechens N, Singh V, Gkikopoulos T, Schofield P, Rocha S, Owen-Hughes T.
PLoS Genet. 2016 Mar 28;12(3):e1005940. doi: 10.1371/journal.pgen.1005940. eCollection 2016 Mar. Erratum in: PLoS Genet. 2016 May;12(5):e1006086.
PMID:27019336
Hypoxia Induced NF-κB.
D'Ignazio L, Rocha S.
Cells. 2016 Mar 8;5(1). pii: E10. doi: 10.3390/cells5010010. Review.
PMID:27005664
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Klionsky DJ, Abdelmohsen K....
Autophagy. 2016;12(2):443. Selliez, Iban [corrected to Seiliez, Iban].
PMID:26799652
Teresa Pinto A, Laranjeiro Pinto M, Patrícia Cardoso A, Monteiro C, Teixeira Pinto M, Filipe Maia A, Castro P, Figueira R, Monteiro A, Marques M, Mareel M, Dos Santos SG, Seruca R, Adolfo Barbosa M, Rocha S, José Oliveira M.
Sci Rep. 2016 Jan 6;6:18765. doi: 10.1038/srep18765.
PMID:26735768
CDK-dependent phosphorylation of PHD1 on serine 130 alters its substrate preference in cells.
Ortmann B, Bensaddek D, Carvalhal S, Moser SC, Mudie S, Griffis ER, Swedlow JR, Lamond AI, Rocha S.
J Cell Sci. 2016 Jan 1;129(1):191-205. doi: 10.1242/jcs.179911. Epub 2015 Dec 7.
PMID:26644182
NF-κB and HIF crosstalk in immune responses.
D'Ignazio L, Bandarra D, Rocha S.
FEBS J. 2016 Feb;283(3):413-24. doi: 10.1111/febs.13578. Epub 2015 Nov 24. Review.
PMID:26513405
2015
J Cell Sci. 2015 Aug 15;128(16):3082-93. doi: 10.1242/jcs.168864. Epub 2015 Jul 6.
PMID:26148512
Bandarra D, Biddlestone J, Mudie S, Müller HA, Rocha S.
Dis Model Mech. 2015 Feb;8(2):169-81. doi: 10.1242/dmm.017285. Epub 2014 Dec 15.
PMID:25510503
Sun Y, George J, Rocha S.
PLoS One. 2015 Apr 1;10(4):e0123649. doi: 10.1371/journal.pone.0123649. eCollection 2015.
PMID:25830774
Int J Mol Med. 2015 Apr;35(4):859-69. doi: 10.3892/ijmm.2015.2079. Epub 2015 Jan 27. Review.
PMID:25625467
2014
Mudie S, Bandarra D, Batie M, Biddlestone J, Moniz S, Ortmann B, Shmakova A, Rocha S.
Cell Cycle. 2014;13(24):3878-91. doi: 10.4161/15384101.2014.972889.
Bremm A, Moniz S, Mader J, Rocha S, Komander D.
EMBO Rep. 2014 Dec;15(12):1268-77. doi: 10.15252/embr.201438850. Epub 2014 Oct 29.
PMID:25355043
Shmakova A, Batie M, Druker J, Rocha S.
Biochem J. 2014 Sep 15;462(3):385-95. doi: 10.1042/BJ20140754. Review.
PMID:25145438
Bandarra D, Biddlestone J, Mudie S, Muller HA, Rocha S.
Biosci Rep. 2014 Jul 29;34(4). pii: e00127. doi: 10.1042/BSR20140095.
PMID:24993778
Biddlestone J, Druker J, Shmakova A, Ferguson G, Swedlow JR, Rocha S.
J Vis Exp. 2014 May 13;(87). doi: 10.3791/51420.
PMID:24895009
Moniz S, Biddlestone J, Rocha S.
Histol Histopathol. 2014 May;29(5):589-600. doi: 10.14670/HH-29.10.589. Epub 2014 Jan 10. Review.
PMID:24407868
2013
Moser SC, Bensaddek D, Ortmann B, Maure JF, Mudie S, Blow JJ, Lamond AI, Swedlow JR, Rocha S.
Dev Cell. 2013 Aug 26;26(4):381-92. doi: 10.1016/j.devcel.2013.06.014. Epub 2013 Aug 8.
Yamada K, Ono M, Bensaddek D, Lamond AI, Rocha S.
Cell Cycle. 2013 Aug 1;12(15):2348-54. doi: 10.4161/cc.25511. Epub 2013 Jul 1.
PMID:23839046
Bett JS, Ibrahim AF, Garg AK, Kelly V, Pedrioli P, Rocha S, Hay RT.
Biochem J. 2013 Apr 15;451(2):185-94. doi: 10.1042/BJ20130026.
PMID:23398456
Yamada K, Ono M, Perkins ND, Rocha S, Lamond AI.
Mol Cell. 2013 Mar 7;49(5):922-33. doi: 10.1016/j.molcel.2012.12.023. Epub 2013 Jan 31.
PMID:23375502
Kenneth NS, Mudie S, Naron S, Rocha S.
Biochem J. 2013 Jan 1;449(1):275-84. doi: 10.1042/BJ20120625.
PMID:23016877
2012
Muñoz IM, MacArtney T, Sanchez-Pulido L, Ponting CP, Rocha S, Rouse J.
J Biol Chem. 2012 Sep 21;287(39):32346-53. Epub 2012 Aug 3.
Melvin A, Rocha S.
Cell Signal. 2012 Jan;24(1):35-43. doi: 10.1016/j.cellsig.2011.08.019. Epub 2011 Sep 8. Review.
PMID:21924352
2011
Melvin A, Mudie S, Rocha S.
Mol Biol Cell. 2011 Nov;22(21):4171-81. doi: 10.1091/mbc.E11-02-0163. Epub 2011 Sep 7.
PMID:21900490
Msaki A, Sánchez AM, Koh LF, Barré B, Rocha S, Perkins ND, Johnson RF.
Mol Biol Cell. 2011 Sep;22(17):3032-40. doi: 10.1091/mbc.E11-04-0280. Epub 2011 Jul 7.
PMID:2173767
Näthke I, Rocha S.
Cell Cycle. 2011 May 15;10(10):1545-7. Epub 2011 May 15.
PMID:21502812
Culver C, Melvin A, Mudie S, Rocha S.
Cell Cycle. 2011 Apr 15;10(8):1249-60. Epub 2011 Apr 15.
PMID:21412054
Melvin A, Mudie S, Rocha S.
Cell Cycle. 2011 Mar 15;10(6):879-82. Epub 2011 Mar 15. Erratum in: Cell Cycle. 2011 Jun 15;10(12):2041.
PMID:21325892
van Uden P, Kenneth NS, Webster R, Müller HA, Mudie S, Rocha S.
PLoS Genet. 2011 Jan 27;7(1):e1001285. doi: 10.1371/journal.pgen.1001285.
PMID:21298084
2010
Newton IP, Kenneth NS, Appleton PL, Näthke I, Rocha S.
Mol Biol Cell. 2010 Nov 1;21(21):3630-8. doi: 10.1091/mbc.E10-04-0312. Epub 2010 Sep 15.
Culver C, Sundqvist A, Mudie S, Melvin A, Xirodimas D, Rocha S.
Mol Cell Biol. 2010 Oct;30(20):4901-21. doi: 10.1128/MCB.00409-10. Epub 2010 Aug 9.
PMID:20696840
Kenneth NS, Mudie S, Rocha S.
EMBO J. 2010 Sep 1;29(17):2966-78. doi: 10.1038/emboj.2010.171. Epub 2010 Jul 23. Erratum in: EMBO J. 2012 May 30;31(11):2660-1.
PMID:20657549
2009
Kenneth NS, Mudie S, van Uden P, Rocha S.
J Biol Chem. 2009 Feb 13;284(7):4123-31. doi: 10.1074/jbc.M808491200. Epub 2008 Dec 19.
PMID:19097995
2008
Kenneth NS, Rocha S.
Biochem J. 2008 Aug 15;414(1):19-29. doi: 10.1042/BJ20081055. Review.
PMID:18651837
Biochem J. 2008 Jun 15;412(3):477-84. doi: 10.1042/BJ20080476.
2007
Rocha S.
Trends Biochem Sci. 2007 Aug;32(8):389-97. Epub 2007 Jul 10. Review.
PMID:17624786